Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs5752307 chr22:21303042 T/C 2.13E-5 177 12.93 31.9 25.2 KM Plot
PCPG rs57553925 chr22:21275803 T/TACAGGAGGGACCTGTATA 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs57581483 chr1:36922737 T/C 8.27E-5 176 25.4 26.62 10.3 KM Plot
PCPG rs5761368 chr22:21277471 A/G 0.000259 178 12.57 31.9 25.2 KM Plot
PCPG rs5761386 chr22:21285846 A/C 0.000194 178 12.93 31.9 25 KM Plot
PCPG rs5761424 chr22:21293201 A/G 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs5761455 chr22:21296097 C/G 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs5761467 chr22:21299073 G/A 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs5761470 chr22:21301005 T/C 2.05E-5 178 12.93 31.9 25 KM Plot
PCPG rs5762478 chr22:28500281 T/C 5.55E-16 175 25.87 20.33 6.4 KM Plot
PCPG rs576359 chr3:53504251 C/T 0.00026 170 31.43 22.35 25.6 KM Plot
PCPG rs57654699 chr16:89587438 C/G 0.000236 177 26.78 25.53 19.3 KM Plot
PCPG rs57667345 chr22:21301451 GA/G 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs57690369 chr16:85219126 C/T 3.3E-9 176 25.77 23.43 15 KM Plot
PCPG rs5769445 chr22:49578082 A/G 0.000162 178 24.3 23.37 27.08 KM Plot